PH01000735G0590's details annotation
1.Annotation
ICBR annotation: homeobox protein knotted-1, putative, expressed
Blast result AT5G25220 : 4.00E-109
Blast annotation: KNOTTED1-like homeobox gene 3
2.Location
Scaffold: PH01000735
Strand: +
| Region | Start | End |
| gene | 366877 | 371812 |
| mRNA | 366877 | 371812 |
| exon | 366877 | 367972 |
| exon | 368528 | 368607 |
| exon | 369192 | 369312 |
| exon | 370083 | 370273 |
| exon | 370351 | 370482 |
| exon | 370572 | 370705 |
| exon | 370887 | 371812 |
| CDS | 367702 | 367972 |
| CDS | 368528 | 368607 |
| CDS | 369192 | 369312 |
| CDS | 370083 | 370273 |
| CDS | 370351 | 370482 |
| CDS | 370572 | 370705 |
| CDS | 370887 | 371010 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001288 | HB-KNOX Transcription_Regulator(from iTAK) TALE Transcription_Regulator(from PlantTFDB) MYB_related Transcription_Regulator(from PlantTFDB) MYB-related Transcription_Regulator(from iTAK) Amino_sugar_and_nucleotide_sugar_metabolism Glutathione_metabolism SNARE_interactions_in_vesicular_transport Ascorbate_and_aldarate_metabolism |
| coexpression network | CFinderM001560 | HB-KNOX Transcription_Regulator(from iTAK) GT48 GlycosylTransferases |
| coexpression network | CFinderM001561 | GT48 GlycosylTransferases HB-KNOX Transcription_Regulator(from iTAK) TKL-Pl-6 (from iTAK) TALE Transcription_Regulator(from PlantTFDB) 1,3-beta-D-glucan synthase complex, |
| coexpression network | CFinderM001562 | HB-KNOX Transcription_Regulator(from iTAK) sterol_24-C-methyltransferase_activity TALE Transcription_Regulator(from PlantTFDB) SNARE_interactions_in_vesicular_transport Steroid_biosynthesis MYB-related Transcription_Regulator(from iTAK) MYB_related Transcription_Regulator(from PlantTFDB) Ascorbate_and_aldarate_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | HB-KNOX |
| Transcription_Regulator(from PlantTFDB) | TALE |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03790.12 | KNOX1 | 35 | 72 |
| PF03791.12 | KNOX2 | 119 | 157 |
| PF03789.12 | ELK | 214 | 235 |
| PF05920.10 | Homeobox_KN | 254 | 293 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0003700 | sequence-specific DNA binding transcription factor activity |
| GO:0005634 | nucleus |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0043565 | sequence-specific DNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.