Annotation of co-expression genes

PH01000740G0850's details annotation

1.Annotation

ICBR annotation: RNA-binding motif protein, putative, expressed

Blast result AT2G29580 : 3.00E-173
Blast annotation: CCCH-type zinc fingerfamily protein with RNA-binding domain

2.Location

Scaffold: PH01000740
Strand: -

RegionStartEnd
gene506230511049
mRNA506230511049
exon506230507373
exon508249508472
exon508880509149
exon509641511049
CDS506521507373
CDS508249508472
CDS508880509149
CDS509641509745

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000008TKL-Pl-4 (from iTAK)
RLK-Pelle_RLCK-VIIa-2 (from iTAK)
transferase activity, transferring phosphorus-containing groups,
protein phosphorylation,
Spliceosome
protein kinase activity,
ATP binding,
protein serine/threonine kinase activity,
exocyst,
chloroplast,
coexpression networkCFinderM000101RLK-Pelle_RLCK-VIIa-2 (from iTAK)
response to heat,
coexpression networkCFinderM000935tRNA aminoacylation for protein translation,
Spliceosome
coexpression networkCFinderM001347ubiquitin-dependent protein catabolic process,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF16131.4Torus133194
PF00076.21RRM_1230287

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Spliceosomepre-mRNA-splicing factor RBM22/SLT11ko03041K12872

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
GO:0008270zinc ion binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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