PH01000746G0330's details annotation
1.Annotation
ICBR annotation: ribosomal protein L13, putative, expressed
Blast result AT1G78630 : 5.50E-76
Blast annotation: Ribosomal protein L13 family protein
2.Location
Scaffold: PH01000746
Strand: +
| Region | Start | End |
| gene | 223251 | 225935 |
| mRNA | 223251 | 225935 |
| exon | 223251 | 223373 |
| exon | 223692 | 223877 |
| exon | 224145 | 224315 |
| exon | 225007 | 225935 |
| CDS | 223302 | 223373 |
| CDS | 223692 | 223877 |
| CDS | 224145 | 224315 |
| CDS | 225007 | 225123 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000775 | Ribosome iron_ion_transmembrane_transport translation, iron ion transmembrane transporter activity, structural constituent of ribosome, intracellular, RNA_degradation |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00572.17 | Ribosomal_L13 | 45 | 167 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ribosome | large subunit ribosomal protein L13 | ko03011 | K02871 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003735 | structural constituent of ribosome |
| GO:0005840 | ribosome |
| GO:0006412 | translation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.