PH01000750G0620's details annotation
1.Annotation
ICBR annotation: WD domain, G-beta repeat domain containing protein, expressed
Blast result AT4G07410 : 0.00E+00
Blast annotation: Transducin family protein / WD-40 repeat family protein
2.Location
Scaffold: PH01000750
Strand: -
| Region | Start | End |
| gene | 387976 | 393864 |
| mRNA | 387976 | 393864 |
| exon | 387976 | 388733 |
| exon | 389019 | 389273 |
| exon | 389511 | 389692 |
| exon | 390283 | 390866 |
| exon | 390950 | 391103 |
| exon | 391447 | 391609 |
| exon | 391699 | 391812 |
| exon | 392013 | 392076 |
| exon | 392158 | 392476 |
| exon | 392777 | 392908 |
| exon | 393002 | 393864 |
| CDS | 388433 | 388733 |
| CDS | 389019 | 389273 |
| CDS | 389511 | 389692 |
| CDS | 390283 | 390866 |
| CDS | 390950 | 391103 |
| CDS | 391447 | 391609 |
| CDS | 391699 | 391812 |
| CDS | 392013 | 392076 |
| CDS | 392158 | 392476 |
| CDS | 392777 | 392908 |
| CDS | 393002 | 393175 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000677 | UMP biosynthetic process, 'de novo' pyrimidine base biosynthetic process, purine ribonucleotide biosynthetic process, histidyl-tRNA aminoacylation, Alanine,_aspartate_and_glutamate_metabolism IMP biosynthetic process, dihydroorotate oxidase activity, dihydroorotate dehydrogenase activity, translation_initiation_factor_binding N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity, histidine-tRNA ligase activity, nucleotide-excision repair, proteolysis, ATP-dependent DNA helicase activity, translational initiation, nucleobase-containing compound metabolic process, RNA-dependent DNA replication, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00400.31 | WD40 | 211 | 236 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ribosome biogenesis in eukaryotes | U3 small nucleolar RNA-associated protein 4 | ko03008 | K14548 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.