PH01000754G0400's details annotation
1.Annotation
ICBR annotation: digalactosyldiacylglycerol synthase, chloroplast precursor, putative, expressed
Blast result AT3G11670 : 0.00E+00
Blast annotation: UDP-Glycosyltransferase superfamily protein
2.Location
Scaffold: PH01000754
Strand: +
| Region | Start | End |
| gene | 236057 | 244128 |
| mRNA | 236057 | 244128 |
| exon | 236057 | 237293 |
| exon | 238630 | 238984 |
| exon | 240526 | 240558 |
| exon | 240989 | 241076 |
| exon | 241492 | 241973 |
| exon | 242049 | 242315 |
| exon | 242512 | 242861 |
| exon | 242958 | 243474 |
| exon | 243972 | 244128 |
| CDS | 237169 | 237293 |
| CDS | 238630 | 238984 |
| CDS | 240526 | 240558 |
| CDS | 240989 | 241076 |
| CDS | 241492 | 241973 |
| CDS | 242049 | 242315 |
| CDS | 242512 | 242861 |
| CDS | 242958 | 243474 |
| CDS | 243972 | 244064 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000561 | GT4 GlycosylTransferases NADP_biosynthetic_process phosphorylation, NAD+ kinase activity, peptidyl-prolyl cis-trans isomerase activity, |
| coexpression network | CFinderM000562 | GT4 GlycosylTransferases biosynthetic process, |
| coexpression network | CFinderM000773 | GT4 GlycosylTransferases phosphorylation, magnesium_ion_transport peptidyl-prolyl cis-trans isomerase activity, magnesium_ion_transmembrane_transporter_activity |
| coexpression network | CFinderM001397 | GT4 GlycosylTransferases |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| GlycosylTransferases | GT4 |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00534.19 | Glycos_transf_1 | 499 | 601 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0009058 | biosynthetic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.