PH01000758G0280's details annotation
1.Annotation
ICBR annotation: secretory carrier-associated membrane protein, putative, expressed
Blast result AT2G20840 : 1.80E-69
Blast annotation: Secretory carrier membrane protein (SCAMP) family protein
2.Location
Scaffold: PH01000758
Strand: +
| Region | Start | End |
| gene | 155395 | 162823 |
| mRNA | 155395 | 162823 |
| exon | 155395 | 155872 |
| exon | 156576 | 156674 |
| exon | 157416 | 157514 |
| exon | 157807 | 157869 |
| exon | 158744 | 158777 |
| exon | 159254 | 159376 |
| exon | 159682 | 159744 |
| exon | 159851 | 159917 |
| exon | 161005 | 161053 |
| exon | 161154 | 161219 |
| exon | 161632 | 161692 |
| exon | 162506 | 162823 |
| CDS | 155816 | 155872 |
| CDS | 156576 | 156674 |
| CDS | 157416 | 157514 |
| CDS | 157807 | 157869 |
| CDS | 158744 | 158777 |
| CDS | 159254 | 159376 |
| CDS | 159682 | 159744 |
| CDS | 159851 | 159917 |
| CDS | 161005 | 161053 |
| CDS | 161154 | 161219 |
| CDS | 161632 | 161692 |
| CDS | 162506 | 162729 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000372 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis L-phenylalanine biosynthetic process, regulation of ARF GTPase activity, Endocytosis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04144.12 | SCAMP | 124 | 201 |
| PF04144.12 | SCAMP | 201 | 248 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0015031 | protein transport |
| GO:0016021 | integral to membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.