PH01000767G0700's details annotation
1.Annotation
ICBR annotation: CAMK_CAMK_like.2 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
Blast result AT5G04870 : 1.00E-143
Blast annotation: calcium dependent protein kinase 1
2.Location
Scaffold: PH01000767
Strand: +
| Region | Start | End |
| gene | 470703 | 473531 |
| mRNA | 470703 | 473531 |
| exon | 470703 | 471474 |
| exon | 471883 | 472026 |
| exon | 472157 | 472309 |
| exon | 472426 | 472541 |
| exon | 472777 | 472944 |
| exon | 473037 | 473261 |
| exon | 473353 | 473531 |
| CDS | 471132 | 471474 |
| CDS | 471883 | 472026 |
| CDS | 472157 | 472309 |
| CDS | 472426 | 472541 |
| CDS | 472777 | 472944 |
| CDS | 473037 | 473261 |
| CDS | 473353 | 473478 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000182 | 3-deoxy-7-phosphoheptulonate synthase activity, aromatic amino acid family biosynthetic process, Stilbenoid,_diarylheptanoid_and_gingerol_biosynthesis Phenylalanine,_tyrosine_and_tryptophan_biosynthesis sphingolipid metabolic process, glucosylceramide catabolic process, GH116 Glycoside_Hydrolases Flavonoid_biosynthesis |
| coexpression network | CFinderM000721 | phospholipid transport, phospholipid-translocating ATPase activity, Glycine,_serine_and_threonine_metabolism cation transport, cation-transporting_ATPase_activity magnesium ion binding, phosphoserine phosphatase activity, CAMK_CDPK (from iTAK) integral to membrane, L-serine biosynthetic process, metal ion binding, Methane_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00069.24 | Pkinase | 118 | 218 |
| PF13499.5 | EF-hand_7 | 266 | 326 |
| PF13499.5 | EF-hand_7 | 336 | 397 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0005509 | calcium ion binding |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.