Annotation of co-expression genes

PH01000770G0540's details annotation

1.Annotation

ICBR annotation: ethylene-insensitive 3, putative, expressed

Blast result AT1G73730 : 3.00E-122
Blast annotation: ETHYLENE-INSENSITIVE3-like 3

2.Location

Scaffold: PH01000770
Strand: +

RegionStartEnd
gene403882406373
mRNA403882406373
exon403882406373
CDS404446406284

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001010RLK-Pelle_PERK-2 (from iTAK)
ethylene mediated signaling pathway,
endoplasmic reticulum membrane,
Plant_hormone_signal_transduction
protein histidine kinase activity,
Others Transcription_Regulator(from iTAK)
two-component sensor activity,
protein tyrosine kinase activity,
two-component signal transduction system (phosphorelay),
EIL Transcription_Regulator(from PlantTFDB)
two-component response regulator activity,
signal transducer activity,
sulfate assimilation,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)EIL
Transcription_Regulator(from PlantTFDB)EIL

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF04873.12EIN338286

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Plant hormone signal transductionethylene-insensitive protein 3ko04075K14514

10.Gene Ontology

GO AccessionGO Annotation
GO:0003700sequence-specific DNA binding transcription factor activity
GO:0005634nucleus

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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