PH01000773G0150's details annotation
1.Annotation
ICBR annotation: serine/threonine-protein kinase Cx32, chloroplast precursor, putative, expressed
Blast result AT2G17220 : 3.00E-133
Blast annotation: Protein kinase superfamily protein
2.Location
Scaffold: PH01000773
Strand: -
| Region | Start | End |
| gene | 99378 | 103827 |
| mRNA | 99378 | 103827 |
| exon | 99378 | 100235 |
| exon | 101018 | 101141 |
| exon | 101221 | 101357 |
| exon | 101620 | 101755 |
| exon | 102441 | 102811 |
| exon | 103451 | 103827 |
| CDS | 99793 | 100235 |
| CDS | 101018 | 101141 |
| CDS | 101221 | 101357 |
| CDS | 101620 | 101755 |
| CDS | 102441 | 102811 |
| CDS | 103451 | 103517 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000192 | protein serine/threonine kinase activity, protein kinase activity, exonuclease activity, protein phosphorylation, transferase activity, transferring phosphorus-containing groups, ATP binding, polysaccharide_binding RLK-Pelle_SD-2b (from iTAK) RLK-Pelle_WAK (from iTAK) ubiquitin ligase complex, RLK-Pelle_LRR-Xb-2 (from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07714.16 | Pkinase_Tyr | 98 | 374 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0004674 | protein serine/threonine kinase activity |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.