PH01000773G0480's details annotation
1.Annotation
ICBR annotation: S1 RNA binding domain containing protein, expressed
Blast result AT1G12800 : 5.00E-133
Blast annotation: Nucleic acid-binding, OB-fold-like protein
2.Location
Scaffold: PH01000773
Strand: -
| Region | Start | End |
| gene | 327570 | 335096 |
| mRNA | 327570 | 335096 |
| exon | 327570 | 327615 |
| exon | 328077 | 328195 |
| exon | 328286 | 328351 |
| exon | 328444 | 328512 |
| exon | 328620 | 328727 |
| exon | 329032 | 329121 |
| exon | 329214 | 329285 |
| exon | 329581 | 329667 |
| exon | 329736 | 329807 |
| exon | 330392 | 330499 |
| exon | 330575 | 330874 |
| exon | 330966 | 331064 |
| exon | 331240 | 331357 |
| exon | 331698 | 331754 |
| exon | 332035 | 332128 |
| exon | 332412 | 332486 |
| exon | 332572 | 333286 |
| exon | 334041 | 335096 |
| CDS | 327603 | 327615 |
| CDS | 328077 | 328195 |
| CDS | 328286 | 328351 |
| CDS | 328444 | 328512 |
| CDS | 328620 | 328727 |
| CDS | 329032 | 329121 |
| CDS | 329214 | 329285 |
| CDS | 329581 | 329667 |
| CDS | 329736 | 329807 |
| CDS | 330392 | 330499 |
| CDS | 330575 | 330874 |
| CDS | 330966 | 331064 |
| CDS | 331240 | 331357 |
| CDS | 331698 | 331754 |
| CDS | 332035 | 332128 |
| CDS | 332412 | 332486 |
| CDS | 332572 | 333286 |
| CDS | 334041 | 334289 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000362 | RLK-Pelle_LRR-Xa (from iTAK) leucyl-tRNA aminoacylation, guanosine tetraphosphate metabolic process, Aminoacyl-tRNA_biosynthesis leucine-tRNA ligase activity, rRNA processing, ribosome binding, aminoacyl-tRNA_editing_activity tRNA aminoacylation for protein translation, |
| coexpression network | CFinderM001507 | Alanine,_aspartate_and_glutamate_metabolism purine nucleotide biosynthetic process, RLK-Pelle_LRR-Xa (from iTAK) adenylosuccinate synthase activity, [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity, AGC_RSK-2 (from iTAK) SET Transcription_Regulator(from iTAK) chloroplast, Purine_metabolism protein phosphorylation, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00575.22 | S1 | 608 | 679 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003723 | RNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.