PH01000780G0500's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT3G14900 : 1.00E-121
Blast annotation: -
2.Location
Scaffold: PH01000780
Strand: -
| Region | Start | End |
| gene | 348418 | 352951 |
| mRNA | 348418 | 352951 |
| exon | 348418 | 351065 |
| exon | 352149 | 352951 |
| CDS | 349517 | 351065 |
| CDS | 352149 | 352168 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001192 | HRT Transcription_Regulator(from iTAK) HRT-like Transcription_Regulator(from PlantTFDB) isocitrate metabolic process, PHD Transcription_Regulator(from iTAK) COPI vesicle coat, membrane coat, Glutathione_metabolism Citrate_cycle_(TCA_cycle) Carbon_fixation_pathways_in_prokaryotes Peroxisome isocitrate dehydrogenase (NADP+) activity, |
| coexpression network | CFinderM001193 | HRT Transcription_Regulator(from iTAK) HRT-like Transcription_Regulator(from PlantTFDB) GH10 Glycoside_Hydrolases CBM22 Carbohydrate-Binding_Modules hydrolase activity, acting on glycosyl bonds, galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity, integral to membrane, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.