|
1.Module annotation (GSEA enrichment result) | Function Annotation | FDR | Gene Ontolog | | HRT Transcription_Regulator(from iTAK) | 0.001375064 | GFam | | HRT-like Transcription_Regulator(from PlantTFDB) | 0.001375064 | GFam | | isocitrate metabolic process, | 0.01711831 | GO:0006102 | | PHD Transcription_Regulator(from iTAK) | 0.020075188 | GFam | | COPI vesicle coat, | 0.035294581 | GO:0030126 | | membrane coat, | 0.035294581 | GO:0030117 | | Glutathione_metabolism | 0.043872978 | KEGG | | Citrate_cycle_(TCA_cycle) | 0.043872978 | KEGG | | Carbon_fixation_pathways_in_prokaryotes | 0.043872978 | KEGG | | Peroxisome | 0.043872978 | KEGG | | isocitrate dehydrogenase (NADP+) activity, | 0.043917361 | GO:0004450 |
2.Module member annotation | Gene ID | Annotation | Arabidopsis ortholog (Blast e-value) | | PH01000182G1450 | cytosolic NADP+-dependent isocitrate dehydrogenase | AT1G65930 (0.00E+00) | | PH01000287G1110 | Coatomer, alpha subunit | AT1G62020 (0.00E+00) | | PH01000314G0540 | NC domain-containing protein-related | AT1G01225 (2.90E-75) | | PH01000538G0560 | effector of transcription2 | AT5G56780 (8.30E-60) | | PH01000780G0500 | - | AT3G14900 (1.00E-121) | | PH01000822G0290 | Nucleotide-diphospho-sugar transferases superfamily protein | AT1G27600 (2.70E-65) | | PH01001333G0220 | transmembrane nine 1 | AT1G10950 (0) | | PH01003216G0040 | PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein | AT4G39100 (2.40E-78) |
3.Direct connection functional modules | Module ID | Function Annotation | Overlap condition | | CFinderM000263 | Spliceosome
HRT-like Transcription_Regulator(from PlantTFDB)
HRT Transcription_Regulator(from iTAK)
nucleotide binding,
nucleic acid binding,
serine-type endopeptidase activity,
| details | | CFinderM000681 | protein arginylation,
GH47 Glycoside_Hydrolases
arginyltransferase activity,
mannosyl-oligosaccharide 1,2-alpha-mannosidase activity,
Various_types_of_N-glycan_biosynthesis
N-Glycan_biosynthesis
| details | | CFinderM001193 | HRT Transcription_Regulator(from iTAK)
HRT-like Transcription_Regulator(from PlantTFDB)
GH10 Glycoside_Hydrolases
CBM22 Carbohydrate-Binding_Modules
hydrolase activity, acting on glycosyl bonds,
galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity,
integral to membrane,
| details | | CFinderM001408 | outer membrane,
peptide-methionine-(S)-S-oxide reductase activity,
| details | | CFinderM001430 | HRT Transcription_Regulator(from iTAK)
HRT-like Transcription_Regulator(from PlantTFDB)
GH10 Glycoside_Hydrolases
CBM22 Carbohydrate-Binding_Modules
hydrolase activity, acting on glycosyl bonds,
| details | | CFinderM001605 | isocitrate metabolic process,
isocitrate dehydrogenase (NADP+) activity,
Carbon_fixation_pathways_in_prokaryotes
Citrate_cycle_(TCA_cycle)
Glutathione_metabolism
Peroxisome
NAD binding,
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor,
magnesium ion binding,
galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity,
membrane coat,
COPI vesicle coat,
structural molecule activity,
| details | | CFinderM001762 | isocitrate metabolic process,
formaldehyde_catabolic_process
isocitrate dehydrogenase (NADP+) activity,
S-formylglutathione hydrolase activity,
galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity,
carboxylesterase activity,
Carbon_fixation_pathways_in_prokaryotes
Peroxisome
Glutathione_metabolism
Citrate_cycle_(TCA_cycle)
NAD binding,
| details | | CFinderM001792 | galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity,
isocitrate metabolic process,
PHD Transcription_Regulator(from iTAK)
isocitrate dehydrogenase (NADP+) activity,
Carbon_fixation_pathways_in_prokaryotes
Peroxisome
Glutathione_metabolism
Citrate_cycle_(TCA_cycle)
| details | | CFinderM001817 | GH10 Glycoside_Hydrolases
CBM22 Carbohydrate-Binding_Modules
| details |
4.Expression profilings |
