Annotation of co-expression genes

PH01000182G1450's details annotation

1.Annotation

ICBR annotation: dehydrogenase, putative, expressed

Blast result AT1G65930 : 0.00E+00
Blast annotation: cytosolic NADP+-dependent isocitrate dehydrogenase

2.Location

Scaffold: PH01000182
Strand: +

RegionStartEnd
gene952852957001
mRNA952852957001
exon952852953029
exon953820953863
exon953973954082
exon954423954460
exon954512954646
exon954723954776
exon954857954958
exon955131955216
exon955311955414
exon955540955608
exon955690955805
exon955906955940
exon956104956246
exon956497956622
exon956727957001
CDS952981953029
CDS953820953863
CDS953973954082
CDS954423954460
CDS954512954646
CDS954723954776
CDS954857954958
CDS955131955216
CDS955311955414
CDS955540955608
CDS955690955805
CDS955906955940
CDS956104956246
CDS956497956622
CDS956727956811

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001192HRT Transcription_Regulator(from iTAK)
HRT-like Transcription_Regulator(from PlantTFDB)
isocitrate metabolic process,
PHD Transcription_Regulator(from iTAK)
COPI vesicle coat,
membrane coat,
Glutathione_metabolism
Citrate_cycle_(TCA_cycle)
Carbon_fixation_pathways_in_prokaryotes
Peroxisome
isocitrate dehydrogenase (NADP+) activity,
coexpression networkCFinderM001605isocitrate metabolic process,
isocitrate dehydrogenase (NADP+) activity,
Carbon_fixation_pathways_in_prokaryotes
Citrate_cycle_(TCA_cycle)
Glutathione_metabolism
Peroxisome
NAD binding,
oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor,
magnesium ion binding,
galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity,
membrane coat,
COPI vesicle coat,
structural molecule activity,
coexpression networkCFinderM001762isocitrate metabolic process,
formaldehyde_catabolic_process
isocitrate dehydrogenase (NADP+) activity,
S-formylglutathione hydrolase activity,
galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity,
carboxylesterase activity,
Carbon_fixation_pathways_in_prokaryotes
Peroxisome
Glutathione_metabolism
Citrate_cycle_(TCA_cycle)
NAD binding,
coexpression networkCFinderM001792galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity,
isocitrate metabolic process,
PHD Transcription_Regulator(from iTAK)
isocitrate dehydrogenase (NADP+) activity,
Carbon_fixation_pathways_in_prokaryotes
Peroxisome
Glutathione_metabolism
Citrate_cycle_(TCA_cycle)

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00180.19Iso_dh7401

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Citrate cycle (TCA cycle)isocitrate dehydrogenase [EC:1.1.1.42]ko00020K00031
Carbon fixation pathways in prokaryotesisocitrate dehydrogenase [EC:1.1.1.42]ko00720K00031
Glutathione metabolismisocitrate dehydrogenase [EC:1.1.1.42]ko00480K00031
Peroxisomeisocitrate dehydrogenase [EC:1.1.1.42]ko04146K00031

10.Gene Ontology

GO AccessionGO Annotation
GO:0000287magnesium ion binding
GO:0004450isocitrate dehydrogenase (NADP+) activity
GO:0006102isocitrate metabolic process
GO:0016616oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0051287NAD binding
GO:0055114oxidation-reduction process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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