PH01000822G0290's details annotation
1.Annotation
ICBR annotation: glycosyltransferase family 43 protein, putative, expressed
Blast result AT1G27600 : 2.70E-65
Blast annotation: Nucleotide-diphospho-sugar transferases superfamily protein
2.Location
Scaffold: PH01000822
Strand: +
| Region | Start | End |
| gene | 208639 | 213182 |
| mRNA | 208639 | 213182 |
| exon | 208639 | 209956 |
| exon | 211478 | 211727 |
| exon | 212181 | 213182 |
| CDS | 209151 | 209956 |
| CDS | 211478 | 211727 |
| CDS | 212181 | 212351 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001192 | HRT Transcription_Regulator(from iTAK) HRT-like Transcription_Regulator(from PlantTFDB) isocitrate metabolic process, PHD Transcription_Regulator(from iTAK) COPI vesicle coat, membrane coat, Glutathione_metabolism Citrate_cycle_(TCA_cycle) Carbon_fixation_pathways_in_prokaryotes Peroxisome isocitrate dehydrogenase (NADP+) activity, |
| coexpression network | CFinderM001193 | HRT Transcription_Regulator(from iTAK) HRT-like Transcription_Regulator(from PlantTFDB) GH10 Glycoside_Hydrolases CBM22 Carbohydrate-Binding_Modules hydrolase activity, acting on glycosyl bonds, galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity, integral to membrane, |
| coexpression network | CFinderM001605 | isocitrate metabolic process, isocitrate dehydrogenase (NADP+) activity, Carbon_fixation_pathways_in_prokaryotes Citrate_cycle_(TCA_cycle) Glutathione_metabolism Peroxisome NAD binding, oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, magnesium ion binding, galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity, membrane coat, COPI vesicle coat, structural molecule activity, |
| coexpression network | CFinderM001762 | isocitrate metabolic process, formaldehyde_catabolic_process isocitrate dehydrogenase (NADP+) activity, S-formylglutathione hydrolase activity, galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity, carboxylesterase activity, Carbon_fixation_pathways_in_prokaryotes Peroxisome Glutathione_metabolism Citrate_cycle_(TCA_cycle) NAD binding, |
| coexpression network | CFinderM001792 | galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity, isocitrate metabolic process, PHD Transcription_Regulator(from iTAK) isocitrate dehydrogenase (NADP+) activity, Carbon_fixation_pathways_in_prokaryotes Peroxisome Glutathione_metabolism Citrate_cycle_(TCA_cycle) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03360.15 | Glyco_transf_43 | 176 | 384 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0015018 | galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity |
| GO:0016020 | membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.