PH01000781G0110's details annotation
1.Annotation
ICBR annotation: VAMP-like protein YKT62, putative, expressed
Blast result AT5G58060 : 1.40E-36
Blast annotation: SNARE-like superfamily protein
2.Location
Scaffold: PH01000781
Strand: +
| Region | Start | End |
| gene | 61861 | 68826 |
| mRNA | 61861 | 68826 |
| exon | 61861 | 62330 |
| exon | 63348 | 63532 |
| exon | 64079 | 64164 |
| exon | 64588 | 64766 |
| exon | 65652 | 65756 |
| exon | 67628 | 67693 |
| exon | 68286 | 68372 |
| exon | 68516 | 68826 |
| CDS | 62235 | 62330 |
| CDS | 63348 | 63532 |
| CDS | 64079 | 64164 |
| CDS | 64588 | 64766 |
| CDS | 65652 | 65756 |
| CDS | 67628 | 67693 |
| CDS | 68286 | 68372 |
| CDS | 68516 | 68527 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001405 | transcription factor TFIIF complex, transcription initiation from RNA polymerase II promoter, Basal_transcription_factors Endocytosis Oxidative_phosphorylation protein catabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00957.20 | Synaptobrevin | 222 | 268 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006810 | transport |
| GO:0016021 | integral to membrane |
| GO:0016192 | vesicle-mediated transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.