PH01000781G0710's details annotation
1.Annotation
ICBR annotation: RNA recognition motif containing protein, putative, expressed
Blast result AT1G33470 : 2.40E-50
Blast annotation: RNA-binding (RRM/RBD/RNP motifs) family protein
2.Location
Scaffold: PH01000781
Strand: -
| Region | Start | End |
| gene | 415090 | 421428 |
| mRNA | 415090 | 421428 |
| exon | 415090 | 415524 |
| exon | 416274 | 416562 |
| exon | 416822 | 416858 |
| exon | 418594 | 418738 |
| exon | 420325 | 420466 |
| exon | 420728 | 421428 |
| CDS | 415415 | 415524 |
| CDS | 416274 | 416562 |
| CDS | 416822 | 416858 |
| CDS | 418594 | 418738 |
| CDS | 420325 | 420466 |
| CDS | 420728 | 420913 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001156 | single-stranded DNA binding, DNA_replication |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00076.21 | RRM_1 | 19 | 74 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000166 | nucleotide binding |
| GO:0003676 | nucleic acid binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.