PH01000781G0730's details annotation
1.Annotation
ICBR annotation: CRS1/YhbY domain containing protein, putative, expressed
Blast result AT2G28480 : 3.70E-85
Blast annotation: RNA-binding CRS1 / YhbY (CRM) domain protein
2.Location
Scaffold: PH01000781
Strand: -
| Region | Start | End |
| gene | 429140 | 432225 |
| mRNA | 429140 | 432225 |
| exon | 429140 | 429760 |
| exon | 430240 | 430638 |
| exon | 431180 | 431501 |
| exon | 431942 | 432225 |
| CDS | 429434 | 429760 |
| CDS | 430240 | 430638 |
| CDS | 431180 | 431501 |
| CDS | 431942 | 432048 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001457 | mRNA_surveillance_pathway Diterpenoid_biosynthesis CAMTA Transcription_Regulator(from PlantTFDB) protein binding, mechanically-gated_ion_channel_activity |
| coexpression network | CFinderM001499 | Glutathione_metabolism metallopeptidase activity, ionotropic glutamate receptor activity, extracellular-glutamate-gated ion channel activity, outer membrane-bounded periplasmic space, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01985.20 | CRS1_YhbY | 172 | 256 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003723 | RNA binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.