PH01000781G0890's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT5G12470 : 8.00E-103
Blast annotation: Protein of unknown function (DUF3411)
2.Location
Scaffold: PH01000781
Strand: -
| Region | Start | End |
| gene | 518830 | 523715 |
| mRNA | 518830 | 523715 |
| exon | 518830 | 519208 |
| exon | 519806 | 519931 |
| exon | 520152 | 520291 |
| exon | 520378 | 520422 |
| exon | 520595 | 520648 |
| exon | 520731 | 520885 |
| exon | 522012 | 522103 |
| exon | 522497 | 522579 |
| exon | 522700 | 523715 |
| CDS | 518965 | 519208 |
| CDS | 519806 | 519931 |
| CDS | 520152 | 520291 |
| CDS | 520378 | 520422 |
| CDS | 520595 | 520648 |
| CDS | 520731 | 520885 |
| CDS | 522012 | 522103 |
| CDS | 522497 | 522579 |
| CDS | 522700 | 523245 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000754 | Ribosome outer membrane, proteasome core complex, alpha-subunit complex, structural constituent of ribosome, threonine-type endopeptidase activity, endopeptidase activity, translation, intracellular, proteasome core complex, Proteasome proteolysis involved in cellular protein catabolic process, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF11891.7 | RETICULATA-like | 159 | 207 |
| PF11891.7 | RETICULATA-like | 246 | 379 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.