PH01000784G0060's details annotation
1.Annotation
ICBR annotation: major facilitator superfamily antiporter, putative, expressed
Blast result AT5G13750 : 4.10E-28
Blast annotation: zinc induced facilitator-like 1
2.Location
Scaffold: PH01000784
Strand: -
| Region | Start | End |
| gene | 27512 | 35479 |
| mRNA | 27512 | 35479 |
| exon | 27512 | 28426 |
| exon | 29048 | 29091 |
| exon | 29526 | 29614 |
| exon | 29787 | 29894 |
| exon | 30453 | 30515 |
| exon | 31043 | 31243 |
| exon | 31755 | 31830 |
| exon | 31972 | 32021 |
| exon | 32095 | 32157 |
| exon | 32248 | 32301 |
| exon | 32387 | 32489 |
| exon | 32621 | 32723 |
| exon | 32842 | 32902 |
| exon | 33111 | 33151 |
| exon | 34473 | 35479 |
| CDS | 28221 | 28426 |
| CDS | 29048 | 29091 |
| CDS | 29526 | 29614 |
| CDS | 29787 | 29894 |
| CDS | 30453 | 30515 |
| CDS | 31043 | 31243 |
| CDS | 31755 | 31830 |
| CDS | 31972 | 32021 |
| CDS | 32095 | 32157 |
| CDS | 32248 | 32301 |
| CDS | 32387 | 32489 |
| CDS | 32621 | 32723 |
| CDS | 32842 | 32902 |
| CDS | 33111 | 33151 |
| CDS | 34473 | 34614 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001010 | RLK-Pelle_PERK-2 (from iTAK) ethylene mediated signaling pathway, endoplasmic reticulum membrane, Plant_hormone_signal_transduction protein histidine kinase activity, Others Transcription_Regulator(from iTAK) two-component sensor activity, protein tyrosine kinase activity, two-component signal transduction system (phosphorelay), EIL Transcription_Regulator(from PlantTFDB) two-component response regulator activity, signal transducer activity, sulfate assimilation, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.