Annotation of co-expression genes

PH01000793G0170's details annotation

1.Annotation

ICBR annotation: MIF4G domain containing protein, putative, expressed

Blast result AT2G39260 : 8.70E-79
Blast annotation: binding;RNA binding

2.Location

Scaffold: PH01000793
Strand: -

RegionStartEnd
gene9198997168
mRNA9198997168
exon9198994581
exon9521295286
exon9550195686
exon9608097168
CDS9361694581
CDS9521295286
CDS9550195686
CDS9608096274

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001520SWI/SNF-SWI3 Transcription_Regulator(from iTAK)
Glycine,_serine_and_threonine_metabolism
L-serine biosynthetic process,
RNA metabolic process,
Methane_metabolism
phosphoglycerate dehydrogenase activity,
glycopeptide_alpha-N-acetylgalactosaminidase_activity

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF02854.18MIF4G67128
PF04050.13Upf2278414

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003677DNA binding
GO:0003723RNA binding
GO:0005488binding
GO:0005515protein binding
GO:0016070RNA metabolic process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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