Annotation of co-expression genes

PH01000799G0330's details annotation

1.Annotation

ICBR annotation: STRUBBELIG-RECEPTOR FAMILY 6 precursor, putative, expressed

Blast result AT1G53730 : 0.00E+00
Blast annotation: STRUBBELIG-receptor family 6

2.Location

Scaffold: PH01000799
Strand: +

RegionStartEnd
gene240141246174
mRNA240141246174
exon240141240308
exon241289241421
exon241506241577
exon241661241735
exon241864241935
exon242023242094
exon242223242294
exon242383242448
exon242529242594
exon242672242976
exon243065243351
exon244102244373
exon244611244746
exon244993245123
exon245226245382
exon245479246174
CDS240212240308
CDS241289241421
CDS241506241577
CDS241661241735
CDS241864241935
CDS242023242094
CDS242223242294
CDS242383242448
CDS242529242594
CDS242672242976
CDS243065243351
CDS244102244373
CDS244611244746
CDS244993245123
CDS245226245382
CDS245479245622

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000929LIM Transcription_Regulator(from iTAK)
RLK-Pelle_LRR-V (from iTAK)
Amino_sugar_and_nucleotide_sugar_metabolism
cellular carbohydrate metabolic process,
coexpression networkCFinderM000930LIM Transcription_Regulator(from iTAK)
RLK-Pelle_LRR-V (from iTAK)

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF08263.11LRRNT_23070
PF13516.5LRR_6145159
PF13855.5LRR_8163205
PF07714.16Pkinase_Tyr418687

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0005515protein binding
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.