PH01000801G0160's details annotation
1.Annotation
ICBR annotation: nuclear transport factor 2, putative, expressed
Blast result AT5G43960 : 1.60E-42
Blast annotation: Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain
2.Location
Scaffold: PH01000801
Strand: -
| Region | Start | End |
| gene | 88403 | 93704 |
| mRNA | 88403 | 93704 |
| exon | 88403 | 88750 |
| exon | 89106 | 89169 |
| exon | 89660 | 89725 |
| exon | 89783 | 89856 |
| exon | 90873 | 91053 |
| exon | 91132 | 91424 |
| exon | 91963 | 92269 |
| exon | 93186 | 93326 |
| exon | 93424 | 93704 |
| CDS | 88617 | 88750 |
| CDS | 89106 | 89169 |
| CDS | 89660 | 89725 |
| CDS | 89783 | 89856 |
| CDS | 90873 | 91053 |
| CDS | 91132 | 91424 |
| CDS | 91963 | 92269 |
| CDS | 93186 | 93326 |
| CDS | 93424 | 93480 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001367 | histone deacetylation, protein import into nucleus, RLK-Pelle_RLCK-VIIa-2 (from iTAK) histone deacetylase activity, |
| coexpression network | CFinderM001502 | SET Transcription_Regulator(from iTAK) ribonucleoprotein complex, nucleus, histone_lysine_methylation RNA processing, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02136.19 | NTF2 | 20 | 135 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000166 | nucleotide binding |
| GO:0005622 | intracellular |
| GO:0006810 | transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.