PH01000802G0150's details annotation
1.Annotation
ICBR annotation: ribosomal protein S6 family protein, putative
Blast result AT3G18760 : 4.50E-11
Blast annotation: Translation elongation factor EF1B/ribosomal protein S6 family protein
2.Location
Scaffold: PH01000802
Strand: -
| Region | Start | End |
| gene | 82013 | 85522 |
| mRNA | 82013 | 85522 |
| exon | 82013 | 83264 |
| exon | 83486 | 85522 |
| CDS | 82995 | 83264 |
| CDS | 83486 | 83536 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000118 | |
| coexpression network | CFinderM001116 | protein folding, MYB_related Transcription_Regulator(from PlantTFDB) MYB-related Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.