PH01000812G0490's details annotation
1.Annotation
ICBR annotation: VHS and GAT domain containing protein, expressed
Blast result AT4G32760 : 3.20E-47
Blast annotation: ENTH/VHS/GAT family protein
2.Location
Scaffold: PH01000812
Strand: -
| Region | Start | End |
| gene | 354540 | 359709 |
| mRNA | 354540 | 359709 |
| exon | 354540 | 355425 |
| exon | 355627 | 356126 |
| exon | 357241 | 357474 |
| exon | 357878 | 358011 |
| exon | 358415 | 359709 |
| CDS | 354719 | 355425 |
| CDS | 355627 | 356126 |
| CDS | 357241 | 357474 |
| CDS | 357878 | 358011 |
| CDS | 358415 | 358696 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001619 | RLK-Pelle_LysM (from iTAK) Trihelix Transcription_Regulator(from PlantTFDB) Mo-molybdopterin cofactor biosynthetic process, molybdopterin cofactor biosynthetic process, SOS_response 5-amino-6-(5-phosphoribosylamino)uracil reductase activity, riboflavin biosynthetic process, Endocytosis Homologous_recombination |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.