PH01000815G0170's details annotation
1.Annotation
ICBR annotation: transcription factor jumonji, putative
Blast result AT3G07610 : 6.20E-95
Blast annotation: Transcription factor jumonji (jmjC) domain-containing protein
2.Location
Scaffold: PH01000815
Strand: -
| Region | Start | End |
| gene | 123962 | 127722 |
| mRNA | 123962 | 127722 |
| exon | 123962 | 124037 |
| exon | 124117 | 124446 |
| exon | 124587 | 125535 |
| exon | 125619 | 125682 |
| exon | 125797 | 125938 |
| exon | 125997 | 126096 |
| exon | 126331 | 126515 |
| exon | 126861 | 127064 |
| exon | 127289 | 127348 |
| exon | 127526 | 127722 |
| CDS | 124020 | 124037 |
| CDS | 124117 | 124446 |
| CDS | 124587 | 125535 |
| CDS | 125619 | 125682 |
| CDS | 125797 | 125938 |
| CDS | 125997 | 126096 |
| CDS | 126331 | 126515 |
| CDS | 126861 | 127064 |
| CDS | 127289 | 127348 |
| CDS | 127526 | 127576 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000787 | TKL-Pl-3 (from iTAK) RLK-Pelle_LRR-II (from iTAK) RNA-directed RNA polymerase activity, protein phosphorylation, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.