PH01000826G0420's details annotation
1.Annotation
ICBR annotation: signal peptide peptidase-like 2B, putative, expressed
Blast result AT1G63690 : 2.00E-141
Blast annotation: SIGNAL PEPTIDE PEPTIDASE-LIKE 2
2.Location
Scaffold: PH01000826
Strand: -
| Region | Start | End |
| gene | 224584 | 227773 |
| mRNA | 224584 | 227773 |
| exon | 224584 | 224739 |
| exon | 224862 | 224986 |
| exon | 225322 | 225392 |
| exon | 225554 | 225696 |
| exon | 225778 | 225870 |
| exon | 225987 | 226040 |
| exon | 226120 | 226276 |
| exon | 226394 | 226428 |
| exon | 226700 | 226882 |
| exon | 226967 | 227107 |
| exon | 227285 | 227773 |
| CDS | 224737 | 224739 |
| CDS | 224862 | 224986 |
| CDS | 225322 | 225392 |
| CDS | 225554 | 225696 |
| CDS | 225778 | 225870 |
| CDS | 225987 | 226040 |
| CDS | 226120 | 226276 |
| CDS | 226394 | 226428 |
| CDS | 226700 | 226882 |
| CDS | 226967 | 227107 |
| CDS | 227285 | 227329 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001874 | Endocytosis Jumonji Transcription_Regulator(from iTAK) bZIP Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04258.12 | Peptidase_A22B | 79 | 312 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004190 | aspartic-type endopeptidase activity |
| GO:0016021 | integral to membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.