PH01000828G0460's details annotation
1.Annotation
ICBR annotation: ANTH/ENTH domain containing protein, putative, expressed
Blast result AT5G35200 : 9.40E-86
Blast annotation: ENTH/ANTH/VHS superfamily protein
2.Location
Scaffold: PH01000828
Strand: -
| Region | Start | End |
| gene | 349532 | 358449 |
| mRNA | 349532 | 358449 |
| exon | 349532 | 351235 |
| exon | 351323 | 351438 |
| exon | 351535 | 351610 |
| exon | 351683 | 351835 |
| exon | 352159 | 352224 |
| exon | 352482 | 352547 |
| exon | 352655 | 352720 |
| exon | 352834 | 352884 |
| exon | 352987 | 353070 |
| exon | 353659 | 353759 |
| exon | 353856 | 353997 |
| exon | 354398 | 354498 |
| exon | 354595 | 354706 |
| exon | 357765 | 357862 |
| exon | 358128 | 358197 |
| exon | 358343 | 358449 |
| CDS | 350870 | 351235 |
| CDS | 351323 | 351438 |
| CDS | 351535 | 351610 |
| CDS | 351683 | 351835 |
| CDS | 352159 | 352224 |
| CDS | 352482 | 352547 |
| CDS | 352655 | 352720 |
| CDS | 352834 | 352884 |
| CDS | 352987 | 353070 |
| CDS | 353659 | 353759 |
| CDS | 353856 | 353997 |
| CDS | 354398 | 354498 |
| CDS | 354595 | 354706 |
| CDS | 357765 | 357862 |
| CDS | 358128 | 358197 |
| CDS | 358343 | 358408 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001089 | clathrin_coat_assembly clathrin_coat clathrin_binding 1-phosphatidylinositol_binding phospholipid binding, |
| coexpression network | CFinderM001154 | clathrin_coat RLK-Pelle_LysM (from iTAK) clathrin_coat_assembly Trihelix Transcription_Regulator(from PlantTFDB) cellular amino acid biosynthetic process, RLK-Pelle_SD-2b (from iTAK) clathrin_binding 1-phosphatidylinositol_binding |
| coexpression network | CFinderM001162 | clathrin_coat_assembly clathrin_coat RLK-Pelle_SD-2b (from iTAK) |
| coexpression network | CFinderM001862 | clathrin_coat clathrin_coat_assembly 1-phosphatidylinositol_binding clathrin_binding cellular metabolic process, phospholipid binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07651.15 | ANTH | 23 | 144 |
| PF07651.15 | ANTH | 148 | 319 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005543 | phospholipid binding |
| GO:0005545 | 1-phosphatidylinositol binding |
| GO:0030118 | clathrin coat |
| GO:0030276 | clathrin binding |
| GO:0048268 | clathrin coat assembly |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.