PH01000829G0500's details annotation
1.Annotation
ICBR annotation: outer membrane protein, OMP85 family, putative, expressed
Blast result AT3G46740 : 0.00E+00
Blast annotation: translocon at the outer envelope membrane of chloroplasts 75-III
2.Location
Scaffold: PH01000829
Strand: -
| Region | Start | End |
| gene | 329723 | 336148 |
| mRNA | 329723 | 336148 |
| exon | 329723 | 329779 |
| exon | 329871 | 329949 |
| exon | 330078 | 330169 |
| exon | 330778 | 331003 |
| exon | 331245 | 331499 |
| exon | 331900 | 332148 |
| exon | 332252 | 332446 |
| exon | 333114 | 333221 |
| exon | 333410 | 333580 |
| exon | 334178 | 334965 |
| exon | 335215 | 336148 |
| CDS | 329733 | 329779 |
| CDS | 329871 | 329949 |
| CDS | 330078 | 330169 |
| CDS | 330778 | 331003 |
| CDS | 331245 | 331499 |
| CDS | 331900 | 332148 |
| CDS | 332252 | 332446 |
| CDS | 333114 | 333221 |
| CDS | 333410 | 333580 |
| CDS | 334178 | 334965 |
| CDS | 335215 | 335410 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000825 | outer membrane, ATP binding, Mismatch_repair mismatched DNA binding, Mismatch_repair protein refolding, DNA-directed RNA polymerase activity, cellular protein metabolic process, nucleobase-containing compound metabolic process, |
| coexpression network | CFinderM001427 | outer membrane, RLK-Pelle_DLSV (from iTAK) Protein_processing_in_endoplasmic_reticulum |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01103.22 | Bac_surface_Ag | 400 | 704 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0019867 | outer membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.