PH01000835G0700's details annotation
1.Annotation
ICBR annotation: RNASEH2A - Putative ribonuclease H2 large subunit, expressed
Blast result AT2G25100 : 3.00E-103
Blast annotation: Polynucleotidyl transferase, ribonuclease H-like superfamily protein
2.Location
Scaffold: PH01000835
Strand: +
| Region | Start | End |
| gene | 467096 | 472125 |
| mRNA | 467096 | 472125 |
| exon | 467096 | 467388 |
| exon | 469962 | 470085 |
| exon | 470162 | 470249 |
| exon | 470353 | 470490 |
| exon | 470657 | 470744 |
| exon | 470830 | 470950 |
| exon | 471050 | 471212 |
| exon | 471681 | 472125 |
| CDS | 467289 | 467388 |
| CDS | 469962 | 470085 |
| CDS | 470162 | 470249 |
| CDS | 470353 | 470490 |
| CDS | 470657 | 470744 |
| CDS | 470830 | 470950 |
| CDS | 471050 | 471212 |
| CDS | 471681 | 471740 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001400 | Phenylalanine,_tyrosine_and_tryptophan_biosynthesis 3-dehydroquinate synthase activity, ribonuclease H activity, DNA photolyase activity, cytokinesis aromatic amino acid family biosynthetic process, microtubule cytoskeleton organization, RNA metabolic process, DNA_replication microtubule binding, ubiquitin ligase complex, Ubiquitin_mediated_proteolysis protein ubiquitination, DNA repair, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01351.17 | RNase_HII | 33 | 208 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| DNA replication | ribonuclease H2 subunit A [EC:3.1.26.4] | ko03030 | K10743 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
| GO:0003723 | RNA binding |
| GO:0004523 | ribonuclease H activity |
| GO:0016070 | RNA metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.