PH01000840G0660's details annotation
1.Annotation
ICBR annotation: NAP domain containing protein, putative, expressed
Blast result AT2G19480 : 2.10E-62
Blast annotation: nucleosome assembly protein 1;2
2.Location
Scaffold: PH01000840
Strand: -
| Region | Start | End |
| gene | 470266 | 474623 |
| mRNA | 470266 | 474623 |
| exon | 470266 | 470947 |
| exon | 471422 | 471606 |
| exon | 471744 | 471808 |
| exon | 471934 | 472015 |
| exon | 472292 | 472384 |
| exon | 473140 | 473235 |
| exon | 473729 | 474623 |
| CDS | 470422 | 470947 |
| CDS | 471422 | 471606 |
| CDS | 471744 | 471808 |
| CDS | 471934 | 472015 |
| CDS | 472292 | 472384 |
| CDS | 473140 | 473235 |
| CDS | 473729 | 473911 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001187 | glycogen biosynthetic process, 'de novo' IMP biosynthetic process, 5-(carboxyamino)imidazole_ribonucleotide_mutase_activity |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00956.17 | NAP | 84 | 227 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005634 | nucleus |
| GO:0006334 | nucleosome assembly |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.