Annotation of co-expression genes

PH01000852G0380's details annotation

1.Annotation

ICBR annotation: tetratricopeptide repeat domain containing protein, expressed

Blast result AT5G56290 : 0.00E+00
Blast annotation: peroxin 5

2.Location

Scaffold: PH01000852
Strand: -

RegionStartEnd
gene247488259990
mRNA247488259990
exon247488248097
exon248593248658
exon249202249249
exon251285251524
exon251772251881
exon252286252370
exon252831253077
exon253370253542
exon254018254188
exon255347255466
exon257533257781
exon257976258169
exon258281258626
exon259564259990
CDS247906248097
CDS248593248658
CDS249202249249
CDS251285251524
CDS251772251881
CDS252286252370
CDS252831253077
CDS253370253542
CDS254018254188
CDS255347255466
CDS257533257781
CDS257976258169
CDS258281258626
CDS259564259680

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM001808protein binding,
Peroxisome
RNA_degradation
Endocytosis

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF13432.5TPR_16493553
PF07719.16TPR_2710741

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Peroxisomeperoxin-5ko04146K13342

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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