PH01000855G0150's details annotation
1.Annotation
ICBR annotation: ethylene-insensitive protein, putative, expressed
Blast result AT5G03280 : 3.00E-158
Blast annotation: NRAMP metal ion transporter family protein
2.Location
Scaffold: PH01000855
Strand: +
| Region | Start | End |
| gene | 146222 | 153949 |
| mRNA | 146222 | 153949 |
| exon | 146222 | 149967 |
| exon | 150150 | 150463 |
| exon | 150780 | 150831 |
| exon | 151188 | 151247 |
| exon | 153268 | 153393 |
| exon | 153614 | 153949 |
| CDS | 147337 | 149967 |
| CDS | 150150 | 150463 |
| CDS | 150780 | 150831 |
| CDS | 151188 | 151247 |
| CDS | 153268 | 153393 |
| CDS | 153614 | 153652 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000569 | CMGC_Pl-Tthe (from iTAK) 1,3-beta-D-glucan synthase activity, 1,3-beta-D-glucan synthase complex, membrane, Regulation_of_autophagy |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01566.17 | Nramp | 1 | 104 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005215 | transporter activity |
| GO:0006810 | transport |
| GO:0016020 | membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.