PH01000855G0290's details annotation
1.Annotation
ICBR annotation: HEAT repeat family protein, putative, expressed
Blast result AT5G01400 : 1.20E-48
Blast annotation: HEAT repeat-containing protein
2.Location
Scaffold: PH01000855
Strand: -
| Region | Start | End |
| gene | 243538 | 247703 |
| mRNA | 243538 | 247703 |
| exon | 243538 | 244980 |
| exon | 245054 | 245157 |
| exon | 245477 | 245560 |
| exon | 245646 | 245690 |
| exon | 245986 | 246030 |
| exon | 246415 | 246486 |
| exon | 246757 | 246852 |
| exon | 247567 | 247703 |
| CDS | 244833 | 244980 |
| CDS | 245054 | 245157 |
| CDS | 245477 | 245560 |
| CDS | 245646 | 245690 |
| CDS | 245986 | 246030 |
| CDS | 246415 | 246486 |
| CDS | 246757 | 246852 |
| CDS | 247567 | 247623 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001248 | DNA primase activity, |
| coexpression network | CFinderM001581 | WASH_complex DNA_ligation_involved_in_DNA_repair drug_binding DNA_ligase_activity DNA ligase (ATP) activity, DNA recombination, DNA repair, |
| coexpression network | CFinderM001595 | dephosphorylation, Butanoate_metabolism Citrate_cycle_(TCA_cycle) Pyruvate_metabolism |
| coexpression network | CFinderM001830 | WASH_complex drug_binding oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, Butanoate_metabolism Pyruvate_metabolism Citrate_cycle_(TCA_cycle) Glycolysis_/_Gluconeogenesis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12295.7 | Symplekin_C | 52 | 145 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.