PH01000871G0120's details annotation
1.Annotation
ICBR annotation: ICE-like protease p20 domain containing protein, putative, expressed
Blast result AT1G79340 : 2.00E-117
Blast annotation: metacaspase 4
2.Location
Scaffold: PH01000871
Strand: +
| Region | Start | End |
| gene | 70371 | 72881 |
| mRNA | 70371 | 72881 |
| exon | 70371 | 70952 |
| exon | 71794 | 72881 |
| CDS | 70604 | 70952 |
| CDS | 71794 | 72677 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000038 | bHLH Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM000767 | transport, transporter activity, membrane, acid phosphatase activity, cysteine-type endopeptidase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00656.21 | Peptidase_C14 | 4 | 408 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004197 | cysteine-type endopeptidase activity |
| GO:0006508 | proteolysis |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.