Annotation of co-expression genes

PH01000875G0370's details annotation

1.Annotation

ICBR annotation: expressed_protein

Blast result AT1G66510 : 1.00E-123
Blast annotation: AAR2 protein family

2.Location

Scaffold: PH01000875
Strand: +

RegionStartEnd
gene246436258759
mRNA246436258759
exon246436247694
exon248025248720
exon249031249466
exon250434250736
exon250880250962
exon251757251814
exon252468252527
exon253576253705
exon253822254048
exon254727254819
exon254909254980
exon256036256068
exon256197256337
exon257667257768
exon258117258203
exon258247258759
CDS247183247694
CDS248025248720
CDS249031249466
CDS250434250736
CDS250880250962
CDS251757251814
CDS252468252527
CDS253576253705
CDS253822254048
CDS254727254819
CDS254909254980
CDS256036256068
CDS256197256337
CDS257667257768
CDS258117258203
CDS258247258351

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000389protein folding,
response to heat,
unfolded protein binding,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF05282.10AAR2630998

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003824catalytic activity
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
GO:0005975carbohydrate metabolic process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.