PH01000879G0230's details annotation
1.Annotation
ICBR annotation: STE_PAK_Ste20_STLK.5 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed
Blast result AT5G14720 : 0.00E+00
Blast annotation: Protein kinase superfamily protein
2.Location
Scaffold: PH01000879
Strand: +
| Region | Start | End |
| gene | 167184 | 183390 |
| mRNA | 167184 | 183390 |
| exon | 167184 | 169015 |
| exon | 170211 | 170465 |
| exon | 171951 | 172075 |
| exon | 172204 | 172248 |
| exon | 172348 | 172429 |
| exon | 172521 | 172589 |
| exon | 172663 | 172833 |
| exon | 172907 | 172972 |
| exon | 173535 | 173603 |
| exon | 173726 | 173860 |
| exon | 173954 | 174030 |
| exon | 174995 | 175264 |
| exon | 176387 | 176478 |
| exon | 176685 | 176767 |
| exon | 177588 | 177665 |
| exon | 177832 | 177874 |
| exon | 177957 | 177991 |
| exon | 178192 | 178253 |
| exon | 178319 | 178370 |
| exon | 178729 | 178756 |
| exon | 180822 | 183390 |
| CDS | 168845 | 169015 |
| CDS | 170211 | 170465 |
| CDS | 171951 | 172075 |
| CDS | 172204 | 172248 |
| CDS | 172348 | 172429 |
| CDS | 172521 | 172589 |
| CDS | 172663 | 172833 |
| CDS | 172907 | 172972 |
| CDS | 173535 | 173603 |
| CDS | 173726 | 173860 |
| CDS | 173954 | 174030 |
| CDS | 174995 | 175264 |
| CDS | 176387 | 176478 |
| CDS | 176685 | 176767 |
| CDS | 177588 | 177665 |
| CDS | 177832 | 177874 |
| CDS | 177957 | 177991 |
| CDS | 178192 | 178253 |
| CDS | 178319 | 178370 |
| CDS | 178729 | 178756 |
| CDS | 180822 | 181288 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001436 | STE_STE20-Fray (from iTAK) CAMTA Transcription_Regulator(from PlantTFDB) Ubiquitin_mediated_proteolysis |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00069.24 | Pkinase | 17 | 278 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.