PH01000892G0170's details annotation
1.Annotation
ICBR annotation: GDSL-like lipase/acylhydrolase, putative, expressed
Blast result AT5G45910 : 8.10E-30
Blast annotation: GDSL-like Lipase/Acylhydrolase superfamily protein
2.Location
Scaffold: PH01000892
Strand: -
| Region | Start | End |
| gene | 114601 | 120478 |
| mRNA | 114601 | 120478 |
| exon | 114601 | 115051 |
| exon | 118743 | 118958 |
| exon | 119062 | 120478 |
| CDS | 114819 | 115051 |
| CDS | 118743 | 118958 |
| CDS | 119062 | 119305 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000192 | protein serine/threonine kinase activity, protein kinase activity, exonuclease activity, protein phosphorylation, transferase activity, transferring phosphorus-containing groups, ATP binding, polysaccharide_binding RLK-Pelle_SD-2b (from iTAK) RLK-Pelle_WAK (from iTAK) ubiquitin ligase complex, RLK-Pelle_LRR-Xb-2 (from iTAK) |
| coexpression network | CFinderM000225 | RLK-Pelle_L-LEC (from iTAK) integral to membrane, |
| coexpression network | CFinderM000768 | peptidyl-prolyl cis-trans isomerase activity, |
| coexpression network | CFinderM001127 | RLK-Pelle_L-LEC (from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016787 | hydrolase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.