PH01000896G0440's details annotation
1.Annotation
ICBR annotation: GRAS family transcription factor domain containing protein, expressed
Blast result AT5G52510 : 2.40E-65
Blast annotation: SCARECROW-like 8
2.Location
Scaffold: PH01000896
Strand: -
| Region | Start | End |
| gene | 337171 | 339989 |
| mRNA | 337171 | 339989 |
| exon | 337171 | 339989 |
| CDS | 337551 | 338522 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001664 | MYB_related Transcription_Regulator(from PlantTFDB) GRAS Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | GRAS |
| Transcription_Regulator(from PlantTFDB) | GRAS |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03514.13 | GRAS | 15 | 323 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.