PH01000903G0370's details annotation
1.Annotation
ICBR annotation: ubiquitin-conjugating enzyme, putative, expressed
Blast result AT2G36060 : 5.40E-72
Blast annotation: MMS ZWEI homologue 3
2.Location
Scaffold: PH01000903
Strand: -
| Region | Start | End |
| gene | 195500 | 200623 |
| mRNA | 195500 | 200623 |
| exon | 195500 | 196822 |
| exon | 196896 | 197021 |
| exon | 197410 | 197549 |
| exon | 198676 | 198766 |
| exon | 199046 | 200623 |
| CDS | 196682 | 196822 |
| CDS | 196896 | 197021 |
| CDS | 197410 | 197549 |
| CDS | 198676 | 198766 |
| CDS | 199046 | 199786 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001682 | RLK-Pelle_WAK_LRK10L-1 (from iTAK) Steroid_biosynthesis sterol_24-C-methyltransferase_activity steroid biosynthetic process, single-stranded DNA binding, |
| coexpression network | CFinderM001871 | Steroid_biosynthesis steroid biosynthetic process, sterol_24-C-methyltransferase_activity |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00179.25 | UQ_con | 45 | 138 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016881 | acid-amino acid ligase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.