PH01000914G0720's details annotation
1.Annotation
ICBR annotation: lipozygenase protein, putative, expressed
Blast result AT1G55020 : 9.00E-119
Blast annotation: lipoxygenase 1
2.Location
Scaffold: PH01000914
Strand: -
| Region | Start | End |
| gene | 468326 | 474682 |
| mRNA | 468326 | 474682 |
| exon | 468326 | 468682 |
| exon | 469214 | 469318 |
| exon | 469418 | 469629 |
| exon | 469861 | 470100 |
| exon | 470223 | 470330 |
| exon | 470423 | 470508 |
| exon | 470602 | 470937 |
| exon | 474417 | 474682 |
| CDS | 468430 | 468682 |
| CDS | 469214 | 469318 |
| CDS | 469418 | 469629 |
| CDS | 469861 | 470100 |
| CDS | 470223 | 470330 |
| CDS | 470423 | 470508 |
| CDS | 470602 | 470937 |
| CDS | 474417 | 474603 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000066 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, lipoxygenase activity, Linoleic_acid_metabolism iron ion binding, metal ion binding, oxidation-reduction process, MYB Transcription_Regulator(from PlantTFDB) |
| coexpression network | CFinderM000394 | Endocytosis Alanine,_aspartate_and_glutamate_metabolism IMP biosynthetic process, purine ribonucleotide biosynthetic process, phosphatidylcholine metabolic process, RLK-Pelle_RLCK-VI (from iTAK) Ether_lipid_metabolism |
| coexpression network | CFinderM001010 | RLK-Pelle_PERK-2 (from iTAK) ethylene mediated signaling pathway, endoplasmic reticulum membrane, Plant_hormone_signal_transduction protein histidine kinase activity, Others Transcription_Regulator(from iTAK) two-component sensor activity, protein tyrosine kinase activity, two-component signal transduction system (phosphorelay), EIL Transcription_Regulator(from PlantTFDB) two-component response regulator activity, signal transducer activity, sulfate assimilation, |
| coexpression network | CFinderM001043 | lipoxygenase activity, oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen, Linoleic_acid_metabolism iron ion binding, metal ion binding, MYB Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00305.18 | Lipoxygenase | 61 | 320 |
| PF00305.18 | Lipoxygenase | 320 | 427 |
| PF00305.18 | Lipoxygenase | 432 | 485 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005506 | iron ion binding |
| GO:0005515 | protein binding |
| GO:0016165 | lipoxygenase activity |
| GO:0016702 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen |
| GO:0046872 | metal ion binding |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.