Annotation of co-expression genes

PH01000933G0360's details annotation

1.Annotation

ICBR annotation: peptidyl-prolyl cis-trans isomerase, putative, expressed

Blast result AT2G29960 : 2.40E-89
Blast annotation: cyclophilin 5

2.Location

Scaffold: PH01000933
Strand: -

RegionStartEnd
gene238440241360
mRNA238440241360
exon238440239994
exon240106240181
exon240294240502
exon240959241360
CDS239856239994
CDS240106240181
CDS240294240502
CDS240959240987

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000432TAZ Transcription_Regulator(from iTAK)
transcription cofactor activity,
histone acetyltransferase activity,
threonine-type endopeptidase activity,
endopeptidase activity,
peptidyl-prolyl cis-trans isomerase activity,
proteasome core complex,
proteolysis involved in cellular protein catabolic process,
Oxidative_phosphorylation
Proteasome
mRNA_surveillance_pathway
coexpression networkCFinderM001570cis-Golgi network,
transcription factor TFIID complex,
Basal_transcription_factors

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00160.20Pro_isomerase52212

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003755peptidyl-prolyl cis-trans isomerase activity
GO:0006457protein folding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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