Gene details

Annotation of co-expression genes

PH01000938G0190's details annotation

1.Annotation

ICBR annotation: cig3, putative, expressed

Blast result AT5G19400 : 7.00E-156
Blast annotation: Telomerase activating protein Est1

2.Location

Scaffold: PH01000938
Strand: +

3.Network

Co-expression Network Category	Global Network	Conditional Network
Co-expression Positive	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Co-expression Negative	Top300 PCC genelist MR network genelist	Top300 PCC genelist MR network genelist
Predict protein-portein interaction	null
miRNA-targets relationship	null

4.Functional module

Method	Module ID	Function Annotation
coexpression network	CFinderM000977	mRNA_surveillance_pathway CAMTA Transcription_Regulator(from PlantTFDB) Ubiquitin_mediated_proteolysis defense response,
coexpression network	CFinderM001436	STE_STE20-Fray (from iTAK) CAMTA Transcription_Regulator(from PlantTFDB) Ubiquitin_mediated_proteolysis
coexpression network	CFinderM001457	mRNA_surveillance_pathway Diterpenoid_biosynthesis CAMTA Transcription_Regulator(from PlantTFDB) protein binding, mechanically-gated_ion_channel_activity
coexpression network	CFinderM001458	mRNA_surveillance_pathway AGC_RSK-2 (from iTAK) SBP Transcription_Regulator(from PlantTFDB) cell death,
coexpression network	CFinderM001574	SBP Transcription_Regulator(from PlantTFDB) mRNA_surveillance_pathway bZIP Transcription_Regulator(from PlantTFDB)
coexpression network	CFinderM001729	mRNA_surveillance_pathway CAMTA Transcription_Regulator(from PlantTFDB) protein binding, transferase activity, transferring acyl groups,

5.Cis-elements

6.Expression profilings

7.Gene family

Category	Family
null	null

8.Protein domain

9.KEGG Pathway

Pathway	KEGG Ortholog	Pathway ID	KO
mRNA surveillance pathway	protein SMG7	ko03015	K14409

10.Gene Ontology

GO Accession	GO Annotation
null	null

      Maintained by Xuelian Ma  - Zhen Su's Lab -  China Agricultural University

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