PH01000944G0010's details annotation
1.Annotation
ICBR annotation: helicase conserved C-terminal domain containing protein, expressed
Blast result AT5G39840 : 0.00E+00
Blast annotation: ATP-dependent RNA helicase, mitochondrial, putative
2.Location
Scaffold: PH01000944
Strand: +
| Region | Start | End |
| gene | 5155 | 8300 |
| mRNA | 5155 | 8300 |
| exon | 5155 | 8300 |
| CDS | 6344 | 8170 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000608 | cell cycle arrest, cyclin-dependent protein kinase inhibitor activity, hydrolase_activity,_acting_on_acid_anhydrides |
| coexpression network | CFinderM001011 | LSD Transcription_Regulator(from PlantTFDB) C2C2-LSD Transcription_Regulator(from iTAK) protein folding, peptidyl-prolyl cis-trans isomerase activity, hydrolase_activity,_acting_on_acid_anhydrides |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00271.30 | Helicase_C | 251 | 361 |
| PF12513.7 | SUV3_C | 507 | 554 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
| GO:0004386 | helicase activity |
| GO:0005524 | ATP binding |
| GO:0016817 | hydrolase activity, acting on acid anhydrides |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.