PH01000947G0050's details annotation
1.Annotation
ICBR annotation: 60S ribosomal protein L34, putative, expressed
Blast result AT1G26880 : 1.10E-44
Blast annotation: Ribosomal protein L34e superfamily protein
2.Location
Scaffold: PH01000947
Strand: -
| Region | Start | End |
| gene | 34170 | 37475 |
| mRNA | 34170 | 37475 |
| exon | 34170 | 35667 |
| exon | 35754 | 35863 |
| exon | 36964 | 37043 |
| exon | 37162 | 37475 |
| CDS | 35577 | 35667 |
| CDS | 35754 | 35863 |
| CDS | 36964 | 37043 |
| CDS | 37162 | 37240 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000623 | intracellular, Ribosome translation, structural constituent of ribosome, HB-other Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01199.17 | Ribosomal_L34e | 1 | 96 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ribosome | large subunit ribosomal protein L34e | ko03011 | K02915 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003735 | structural constituent of ribosome |
| GO:0005622 | intracellular |
| GO:0005840 | ribosome |
| GO:0006412 | translation |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.