PH01000951G0430's details annotation
1.Annotation
ICBR annotation: WD domain, G-beta repeat domain containing protein, expressed
Blast result AT2G30050 : 1.00E-118
Blast annotation: transducin family protein / WD-40 repeat family protein
2.Location
Scaffold: PH01000951
Strand: -
| Region | Start | End |
| gene | 277188 | 280008 |
| mRNA | 277188 | 280008 |
| exon | 277188 | 280008 |
| CDS | 278562 | 279494 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001352 | RNA_transport rRNA_catabolic_process |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00400.31 | WD40 | 48 | 87 |
| PF00400.31 | WD40 | 96 | 132 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| RNA transport | protein transport protein SEC13 | ko03013 | K14004 |
| Protein processing in endoplasmic reticulum | protein transport protein SEC13 | ko04141 | K14004 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.