PH01000953G0720's details annotation
1.Annotation
ICBR annotation: MATE efflux family protein, putative, expressed
Blast result AT1G47530 : 2.00E-139
Blast annotation: MATE efflux family protein
2.Location
Scaffold: PH01000953
Strand: -
| Region | Start | End |
| gene | 458480 | 463705 |
| mRNA | 458480 | 463705 |
| exon | 458480 | 458847 |
| exon | 458949 | 459035 |
| exon | 459152 | 459270 |
| exon | 459386 | 459624 |
| exon | 459714 | 459770 |
| exon | 459865 | 459951 |
| exon | 460073 | 460356 |
| exon | 460406 | 460618 |
| exon | 463374 | 463705 |
| CDS | 458752 | 458847 |
| CDS | 458949 | 459035 |
| CDS | 459152 | 459270 |
| CDS | 459386 | 459624 |
| CDS | 459714 | 459770 |
| CDS | 459865 | 459951 |
| CDS | 460073 | 460356 |
| CDS | 460406 | 460618 |
| CDS | 463374 | 463571 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000606 | histone_H2A_acetylation CTP biosynthetic process, histone_H4_acetylation protein neddylation, nucleoside_diphosphate_phosphorylation UTP biosynthetic process, GTP biosynthetic process, carbohydrate phosphorylation, chromatin remodeling, |
| coexpression network | CFinderM000744 | Arginine_and_proline_metabolism Phagosome |
| coexpression network | CFinderM001148 | RLK-Pelle_LRR-VI-1 (from iTAK) exocyst, vesicle docking involved in exocytosis, |
| coexpression network | CFinderM001877 | HD-ZIP Transcription_Regulator(from PlantTFDB) HB-BELL Transcription_Regulator(from iTAK) HB-HD-ZIP Transcription_Regulator(from iTAK) TALE Transcription_Regulator(from PlantTFDB) membrane, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01554.17 | MatE | 21 | 181 |
| PF01554.17 | MatE | 242 | 403 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006855 | drug transmembrane transport |
| GO:0015238 | drug transmembrane transporter activity |
| GO:0015297 | antiporter activity |
| GO:0016020 | membrane |
| GO:0055085 | transmembrane transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.