PH01000954G0320's details annotation
1.Annotation
ICBR annotation: N-dimethylguanosine tRNA methyltransferase, putative, expressed
Blast result AT5G15810 : 4.00E-31
Blast annotation: N2,N2-dimethylguanosine tRNA methyltransferase
2.Location
Scaffold: PH01000954
Strand: +
| Region | Start | End |
| gene | 166273 | 168086 |
| mRNA | 166273 | 168086 |
| exon | 166273 | 166512 |
| exon | 166593 | 166670 |
| exon | 167724 | 168086 |
| CDS | 166390 | 166512 |
| CDS | 166593 | 166670 |
| CDS | 167724 | 167858 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000379 | arginyl-tRNA aminoacylation, arginine-tRNA ligase activity, tRNA processing, tRNA (guanine-N2-)-methyltransferase activity, tRNA aminoacylation for protein translation, double-stranded RNA binding, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02005.15 | TRM | 5 | 39 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003723 | RNA binding |
| GO:0004809 | tRNA (guanine-N2-)-methyltransferase activity |
| GO:0008033 | tRNA processing |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.