PH01000971G0240's details annotation
1.Annotation
ICBR annotation: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative, expressed
Blast result AT5G17920 : 0.00E+00
Blast annotation: Cobalamin-independent synthase family protein
2.Location
Scaffold: PH01000971
Strand: +
| Region | Start | End |
| gene | 173697 | 179125 |
| mRNA | 173697 | 179125 |
| exon | 173697 | 175275 |
| exon | 175369 | 175456 |
| exon | 176178 | 176305 |
| exon | 176390 | 176581 |
| exon | 176678 | 176880 |
| exon | 176963 | 177126 |
| exon | 177262 | 177342 |
| exon | 177427 | 177593 |
| exon | 177670 | 177775 |
| exon | 177959 | 178209 |
| exon | 178309 | 178381 |
| exon | 178470 | 178598 |
| exon | 178686 | 179125 |
| CDS | 174926 | 175275 |
| CDS | 175369 | 175456 |
| CDS | 176178 | 176305 |
| CDS | 176390 | 176581 |
| CDS | 176678 | 176880 |
| CDS | 176963 | 177126 |
| CDS | 177262 | 177342 |
| CDS | 177427 | 177593 |
| CDS | 177670 | 177775 |
| CDS | 177959 | 178209 |
| CDS | 178309 | 178381 |
| CDS | 178470 | 178598 |
| CDS | 178686 | 179054 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000551 | 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, methionine biosynthetic process, Selenocompound_metabolism cellular amino acid biosynthetic process, Cysteine_and_methionine_metabolism zinc ion binding, |
| coexpression network | CFinderM001038 | 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, methionine biosynthetic process, Selenocompound_metabolism cellular amino acid biosynthetic process, Cysteine_and_methionine_metabolism methylenetetrahydrofolate reductase (NADPH) activity, methionine metabolic process, zinc ion binding, One_carbon_pool_by_folate Carbon_fixation_pathways_in_prokaryotes |
| coexpression network | CFinderM001344 | 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity, methionine biosynthetic process, Selenocompound_metabolism cysteine-type endopeptidase activity, cellular amino acid biosynthetic process, Cysteine_and_methionine_metabolism proton transport, proteolysis, hydrogen-translocating pyrophosphatase activity, inorganic diphosphatase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF08267.11 | Meth_synt_1 | 3 | 317 |
| PF01717.17 | Meth_synt_2 | 433 | 756 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Cysteine and methionine metabolism | 5-methyltetrahydropteroyltriglutamate--homocysteinemethyltransferase[EC:2.1.1.14] | ko00270 | K00549 |
| Selenocompound metabolism | 5-methyltetrahydropteroyltriglutamate--homocysteinemethyltransferase[EC:2.1.1.14] | ko00450 | K00549 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003871 | 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity |
| GO:0008270 | zinc ion binding |
| GO:0008652 | cellular amino acid biosynthetic process |
| GO:0009086 | methionine biosynthetic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.