PH01000973G0400's details annotation
1.Annotation
ICBR annotation: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed
Blast result AT1G17720 : 0.00E+00
Blast annotation: Protein phosphatase 2A, regulatory subunit PR55
2.Location
Scaffold: PH01000973
Strand: -
| Region | Start | End |
| gene | 225031 | 228206 |
| mRNA | 225031 | 228206 |
| exon | 225031 | 225189 |
| exon | 225303 | 225370 |
| exon | 225757 | 225834 |
| exon | 225935 | 226026 |
| exon | 226112 | 226180 |
| exon | 226556 | 226605 |
| exon | 227226 | 228206 |
| CDS | 225053 | 225189 |
| CDS | 225303 | 225370 |
| CDS | 225757 | 225834 |
| CDS | 225935 | 226026 |
| CDS | 226112 | 226180 |
| CDS | 226556 | 226605 |
| CDS | 227226 | 227394 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000993 | protein phosphatase type 2A complex, protein phosphatase type 2A regulator activity, mRNA_surveillance_pathway Ribosome_biogenesis_in_eukaryotes signal transduction, |
| coexpression network | CFinderM001490 | protein phosphatase type 2A complex, Others Transcription_Regulator(from iTAK) protein phosphatase type 2A regulator activity, translational initiation, RNA_transport mRNA_surveillance_pathway |
| coexpression network | CFinderM001571 | protein phosphatase type 2A complex, Others Transcription_Regulator(from iTAK) mRNA_surveillance_pathway protein phosphatase type 2A regulator activity, RNA methyltransferase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00400.31 | WD40 | 225 | 261 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| mRNA surveillance pathway | protein phosphatase 2 (formerly 2A), regulatory subunit B | ko03015 | K04354 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000159 | protein phosphatase type 2A complex |
| GO:0005515 | protein binding |
| GO:0007165 | signal transduction |
| GO:0008601 | protein phosphatase type 2A regulator activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.