Annotation of co-expression genes

PH01000985G0260's details annotation

1.Annotation

ICBR annotation: expressed_protein

Blast result AT3G06740 : 5.50E-22
Blast annotation: GATA transcription factor 15

2.Location

Scaffold: PH01000985
Strand: +

RegionStartEnd
gene140375144414
mRNA140375144414
exon140375142160
exon142254142367
exon142477144414
CDS142140142160
CDS142254142367
CDS142477142743

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000073BES1 Transcription_Regulator(from PlantTFDB)
large ribosomal subunit,
C2C2-GATA Transcription_Regulator(from iTAK)
GATA Transcription_Regulator(from PlantTFDB)
coexpression networkCFinderM000074Ribosome
translation,
structural constituent of ribosome,
intracellular,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)C2C2-GATA
Transcription_Regulator(from PlantTFDB)GATA

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00320.26GATA2660

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003700sequence-specific DNA binding transcription factor activity
GO:0006355regulation of transcription, DNA-dependent
GO:0008270zinc ion binding
GO:0043565sequence-specific DNA binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.